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Sometime ago I have published small list of plugins that I was using with Eclipse 3.0 (entry got deleted along with my blosxom instance). Today I'm using Eclipse 3.1M4 which works stable but there is a lack of working plugins for it. Those critical for me are working and here is a short list:
(Update sites, if available, are listed along their corresponding entries)

Working:

• AJDT -- http://download.eclipse.org/technology/ajdt/31/dev/update
• PMD -- http://pmd.sourceforge.net/eclipse
• Visual Editor -- http://update.eclipse.org/tools/ve/updates/1.0
• WebTools -- download page (it contains also a list of compatible GEF, EMF and JEM plugins)
• QuickImage -- http://psnet.nu/eclipse/updates
• AccessModifier -- http://accessmodifier.sourceforge.net/update/
• QuantumDB
• VersionTree
• djUnit
• VEX
• Jython -- http://home.tiscali.be/redrobin/jython/updates/
• Java2Html (only one minor quirk: Java2Html context menu entry is displayed twice in java editor)

Not-working:

• CAP -- it works for the first time, but then it doesn't update charts
• Should be more but I have lost text file with a list of them. :/

updates:

• 01-jan: Added VEX, Java2Html and Jython plugins.